ENSDARG00000018049


Danio rerio

Features
Gene ID: ENSDARG00000018049
  
Biological name :sf3b2
  
Synonyms : sf3b2 / splicing factor 3b, subunit 2
  
Possible biological names infered from orthology : Q13435
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 6756206
Gene end: 6800689
  
Corresponding Affymetrix probe sets: Dr.5469.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000007002
NCBI entrez gene - 570994     See in Manteia.
RefSeq - NM_001105277
RefSeq Peptide - NP_001098747
swissprot - F1QLC5
swissprot - A7YT51
ZFIN ID - ZDB-GENE-070928-1
Ensembl - ENSDARG00000018049
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SF3B2ENSG00000087365Homo sapiens
 Sf3b2ENSMUSG00000024853Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003034  SAP domain
 IPR006568  PSP, proline-rich
 IPR007180  Domain of unknown function DUF382


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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