ENSMUSG00000024853


Mus musculus

Features
Gene ID: ENSMUSG00000024853
  
Biological name :Sf3b2
  
Synonyms : Sf3b2 / splicing factor 3b, subunit 2
  
Possible biological names infered from orthology : Q13435
  
Species: Mus musculus
  
Chr. number: 19
Strand: -1
Band: A
Gene start: 5273923
Gene end: 5295455
  
Corresponding Affymetrix probe sets: 10464974 (MoGene1.0st)   1429362_a_at (Mouse Genome 430 2.0 Array)   1433461_at (Mouse Genome 430 2.0 Array)   1438637_x_at (Mouse Genome 430 2.0 Array)   1453123_at (Mouse Genome 430 2.0 Array)   1456040_at (Mouse Genome 430 2.0 Array)   1456352_a_at (Mouse Genome 430 2.0 Array)   1459836_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000025774
NCBI entrez gene - 319322     See in Manteia.
MGI - MGI:2441856
RefSeq - NM_030109
RefSeq - XM_006531771
RefSeq Peptide - NP_084385
swissprot - Q3UJB0
Ensembl - ENSMUSG00000024853
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b2ENSDARG00000018049Danio rerio
 SF3B2ENSG00000087365Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003034  SAP domain
 IPR006568  PSP, proline-rich
 IPR007180  Domain of unknown function DUF382
 IPR036361  SAP domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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