ENSG00000087365


Homo sapiens

Features
Gene ID: ENSG00000087365
  
Biological name :SF3B2
  
Synonyms : Q13435 / SF3B2 / splicing factor 3b subunit 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q13.1
Gene start: 66050729
Gene end: 66069308
  
Corresponding Affymetrix probe sets: 1558230_at (Human Genome U133 Plus 2.0 Array)   200619_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000431520
Ensembl peptide - ENSP00000436757
Ensembl peptide - ENSP00000435765
Ensembl peptide - ENSP00000435495
Ensembl peptide - ENSP00000432655
Ensembl peptide - ENSP00000431908
Ensembl peptide - ENSP00000318861
NCBI entrez gene - 10992     See in Manteia.
OMIM - 605591
RefSeq - NM_006842
RefSeq - XM_005273726
RefSeq - XM_011544740
RefSeq - XM_017017144
RefSeq Peptide - NP_006833
swissprot - Q13435
swissprot - H0YEX5
swissprot - E9PJT3
swissprot - E9PJ04
swissprot - E9PIL8
swissprot - H0YCG1
swissprot - E9PPJ0
Ensembl - ENSG00000087365
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b2ENSDARG00000018049Danio rerio
 Sf3b2ENSMUSG00000024853Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003034  SAP domain
 IPR006568  PSP, proline-rich
 IPR007180  Domain of unknown function DUF382
 IPR011989  Armadillo-like helical
 IPR036361  SAP domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing TAS
 biological_processGO:0008380 RNA splicing TAS
 biological_processGO:0016032 viral process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IDA
 cellular_componentGO:0005684 U2-type spliceosomal complex IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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