ENSDARG00000018562


Danio rerio

Features
Gene ID: ENSDARG00000018562
  
Biological name :cope
  
Synonyms : coatomer protein complex, subunit epsilon / cope
  
Possible biological names infered from orthology : Coatomer subunit epsilon / O14579 / O89079
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 9513160
Gene end: 9527210
  
Corresponding Affymetrix probe sets: Dr.20131.3.S1_at (Zebrafish Array)   NM_001007364_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000008262
Ensembl peptide - ENSDARP00000137243
NCBI entrez gene - 492492     See in Manteia.
RefSeq - NM_001007364
RefSeq Peptide - NP_001007365
swissprot - F1R7S1
swissprot - A0A0R4IR93
ZFIN ID - ZDB-GENE-041114-59
Ensembl - ENSDARG00000018562
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COPEENSGALG00000003153Gallus gallus
 COPEENSG00000105669Homo sapiens
 CopeENSMUSG00000055681Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006822  Coatomer, epsilon subunit
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEA
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030126 COPI vesicle coat IBA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr