ENSGALG00000003153


Gallus gallus

Features
Gene ID: ENSGALG00000003153
  
Biological name :COPE
  
Synonyms : Coatomer subunit epsilon / COPE / Q5ZIK9
  
Possible biological names infered from orthology : coatomer protein complex subunit epsilon / O14579 / O89079
  
Species: Gallus gallus
  
Chr. number: 28
Strand: 1
Band:
Gene start: 3739329
Gene end: 3744161
  
Corresponding Affymetrix probe sets: GgaAffx.12878.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000004982
NCBI entrez gene - 420117     See in Manteia.
RefSeq - NM_001006339
RefSeq Peptide - NP_001006339
swissprot - Q5ZIK9
Ensembl - ENSGALG00000003153
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 copeENSDARG00000018562Danio rerio
 COPEENSG00000105669Homo sapiens
 CopeENSMUSG00000055681Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006822  Coatomer, epsilon subunit
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IBA
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030126 COPI vesicle coat IBA
 cellular_componentGO:0030137 COPI-coated vesicle IEA
 cellular_componentGO:0030663 COPI-coated vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000005622 ARF4 / ADP ribosylation factor 4 / P18085* / P61750*  / reaction / complex
 ENSGALG00000005357 COPB2 / coatomer protein complex subunit beta 2 / O55029* / P35606* / Coatomer subunit beta *  / complex
 ENSGALG00000007430 ARCN1 / Q5ZL57 / Coatomer subunit delta / P48444* / Q5XJY5* / archain 1*  / complex
 ENSGALG00000006015 COPB1 / Q5ZIA5 / Coatomer subunit beta / P53618* / Q9JIF7* / coatomer protein complex subunit beta 1*  / complex






 

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