ENSGALG00000006015


Gallus gallus

Features
Gene ID: ENSGALG00000006015
  
Biological name :COPB1
  
Synonyms : Coatomer subunit beta / COPB1 / Q5ZIA5
  
Possible biological names infered from orthology : coatomer protein complex subunit beta 1 / P53618 / Q9JIF7
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 10392671
Gene end: 10409126
  
Corresponding Affymetrix probe sets: GgaAffx.12982.1.S1_at (Chicken Array)   GgaAffx.12982.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000059022
Ensembl peptide - ENSGALP00000009665
NCBI entrez gene - 423063     See in Manteia.
RefSeq - XM_015286391
RefSeq - NM_001006467
RefSeq Peptide - NP_001006467
swissprot - Q5ZIA5
swissprot - A0A1L1RJU4
Ensembl - ENSGALG00000006015
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 copb1ENSDARG00000056557Danio rerio
 COPB1ENSG00000129083Homo sapiens
 Copb1ENSMUSG00000030754Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002553  Clathrin/coatomer adaptor, adaptin-like, N-terminal
 IPR011710  Coatomer beta subunit, C-terminal
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR016460  Coatomer beta subunit (COPB1)
 IPR029446  Coatomer beta subunit, appendage platform domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IBA
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA
 cellular_componentGO:0030126 COPI vesicle coat IBA
 cellular_componentGO:0030137 COPI-coated vesicle IEA
 cellular_componentGO:0030663 COPI-coated vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
Neutrophil degranulation
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003153 COPE / Q5ZIK9 / Coatomer subunit epsilon / O14579* / O89079* / coatomer protein complex subunit epsilon*  / complex
 ENSGALG00000005357 COPB2 / coatomer protein complex subunit beta 2 / O55029* / P35606* / Coatomer subunit beta *  / complex
 ENSGALG00000007430 ARCN1 / Q5ZL57 / Coatomer subunit delta / P48444* / Q5XJY5* / archain 1*  / complex
 ENSGALG00000005622 ARF4 / ADP ribosylation factor 4 / P18085* / P61750*  / reaction / complex






 

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