ENSGALG00000005357


Gallus gallus

Features
Gene ID: ENSGALG00000005357
  
Biological name :COPB2
  
Synonyms : coatomer protein complex subunit beta 2 / COPB2
  
Possible biological names infered from orthology : Coatomer subunit beta / O55029 / P35606
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 5884665
Gene end: 5898926
  
Corresponding Affymetrix probe sets: Gga.8560.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000008578
Ensembl peptide - ENSGALP00000062583
Ensembl peptide - ENSGALP00000060471
NCBI entrez gene - 424823     See in Manteia.
RefSeq - XM_422637
swissprot - E1C016
swissprot - A0A1L1RUT1
swissprot - A0A1L1RNV3
Ensembl - ENSGALG00000005357
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 copb2ENSDARG00000038743Danio rerio
 COPB2ENSG00000184432Homo sapiens
 Copb2ENSMUSG00000032458Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR006692  Coatomer, WD associated region
 IPR011044  Quinoprotein amine dehydrogenase, beta chain-like
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR016453  Coatomer beta" subunit (COPB2)
 IPR017986  WD40-repeat-containing domain
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IBA
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:1901998 toxin transport IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030117 membrane coat IEA
 cellular_componentGO:0030126 COPI vesicle coat IEA
 cellular_componentGO:0030663 COPI-coated vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003153 COPE / Q5ZIK9 / Coatomer subunit epsilon / O14579* / O89079* / coatomer protein complex subunit epsilon*  / complex
 ENSGALG00000007430 ARCN1 / Q5ZL57 / Coatomer subunit delta / P48444* / Q5XJY5* / archain 1*  / complex
 ENSGALG00000005622 ARF4 / ADP ribosylation factor 4 / P18085* / P61750*  / reaction / complex
 ENSGALG00000006015 COPB1 / Q5ZIA5 / Coatomer subunit beta / P53618* / Q9JIF7* / coatomer protein complex subunit beta 1*  / complex






 

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