ENSGALG00000007430


Gallus gallus

Features
Gene ID: ENSGALG00000007430
  
Biological name :ARCN1
  
Synonyms : ARCN1 / Coatomer subunit delta / Q5ZL57
  
Possible biological names infered from orthology : archain 1 / P48444 / Q5XJY5
  
Species: Gallus gallus
  
Chr. number: 24
Strand: -1
Band:
Gene start: 5475477
Gene end: 5483503
  
Corresponding Affymetrix probe sets: Gga.16309.1.S1_s_at (Chicken Array)   Gga.1878.1.S1_s_at (Chicken Array)   Gga.1878.2.A1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055719
Ensembl peptide - ENSGALP00000012007
NCBI entrez gene - 770561     See in Manteia.
RefSeq - NM_001079499
RefSeq Peptide - NP_001072967
swissprot - A0A1D5PS39
swissprot - Q5ZL57
swissprot - R9PXM7
Ensembl - ENSGALG00000007430
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arcn1aENSDARG00000002792Danio rerio
 arcn1bENSDARG00000031214Danio rerio
 ARCN1ENSG00000095139Homo sapiens
 Arcn1ENSMUSG00000032096Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011012  Longin-like domain superfamily
 IPR022775  AP complex, mu/sigma subunit
 IPR027059  Coatomer delta subunit
 IPR028565  Mu homology domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEA
 biological_processGO:0008344 adult locomotory behavior IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0021691 cerebellar Purkinje cell layer maturation IEA
 biological_processGO:0043473 pigmentation IEA
 biological_processGO:0048193 Golgi vesicle transport IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030126 COPI vesicle coat IEA
 cellular_componentGO:0030137 COPI-coated vesicle IEA
 cellular_componentGO:0030663 COPI-coated vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA


Pathways (from Reactome)
Pathway description
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000003153 COPE / Q5ZIK9 / Coatomer subunit epsilon / O14579* / O89079* / coatomer protein complex subunit epsilon*  / complex
 ENSGALG00000005357 COPB2 / coatomer protein complex subunit beta 2 / O55029* / P35606* / Coatomer subunit beta *  / complex
 ENSGALG00000006015 COPB1 / Q5ZIA5 / Coatomer subunit beta / P53618* / Q9JIF7* / coatomer protein complex subunit beta 1*  / complex
 ENSGALG00000005622 ARF4 / ADP ribosylation factor 4 / P18085* / P61750*  / complex / reaction






 

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