ENSDARG00000031214


Danio rerio

Features
Gene ID: ENSDARG00000031214
  
Biological name :arcn1b
  
Synonyms : archain 1b / arcn1b
  
Possible biological names infered from orthology : archain 1 / ARCN1 / Coatomer subunit delta / P48444 / Q5XJY5
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 18102280
Gene end: 18115624
  
Corresponding Affymetrix probe sets: Dr.343.1.S1_at (Zebrafish Array)   NM_201993_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000113128
Ensembl peptide - ENSDARP00000047901
NCBI entrez gene - 399661     See in Manteia.
RefSeq - NM_201993
RefSeq Peptide - NP_973722
swissprot - E9QGY2
swissprot - Q7ZU89
ZFIN ID - ZDB-GENE-040121-7
Ensembl - ENSDARG00000031214
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ARCN1ENSGALG00000007430Gallus gallus
 ARCN1ENSG00000095139Homo sapiens
 Arcn1ENSMUSG00000032096Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
arcn1a / archain 1a / ARCN1* / P48444* / Q5XJY5* / archain 1* / Coatomer subunit delta *ENSDARG0000000279283


Protein motifs (from Interpro)
Interpro ID Name
 IPR011012  Longin-like domain superfamily
 IPR022775  AP complex, mu/sigma subunit
 IPR027059  Coatomer delta subunit
 IPR028565  Mu homology domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030126 COPI vesicle coat IEA
 cellular_componentGO:0030663 COPI-coated vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA


Pathways (from Reactome)
Pathway description
COPI-mediated anterograde transport
COPI-dependent Golgi-to-ER retrograde traffic


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000019581 uso1 / USO1 vesicle transport factor / O60763* / Q9Z1Z0* / USO1 vesicle docking factor*  / reaction / complex
 ENSDARG00000034823 copg2 / Q9PUE4 / coatomer protein complex, subunit gamma 2 / Q9QXK3* / Q9UBF2* / Coatomer subunit gamma-2 *  / complex
 ENSDARG00000056557 copb1 / Q66HV4 / coatomer protein complex, subunit beta 1 / P53618* / Q9JIF7* / Coatomer subunit beta *  / complex
 ENSDARG00000027016 gbf1 / golgi brefeldin A resistant guanine nucleotide exchange factor 1 / Q92538*  / complex / reaction






 

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