ENSDARG00000018574


Danio rerio

Features
Gene ID: ENSDARG00000018574
  
Biological name :sf3b4
  
Synonyms : sf3b4 / splicing factor 3b, subunit 4
  
Possible biological names infered from orthology : Q15427 / Q8QZY9
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 7424347
Gene end: 7430858
  
Corresponding Affymetrix probe sets: Dr.1505.1.S1_at (Zebrafish Array)   Dr.21488.1.S1_at (Zebrafish Array)   NM_153661_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000022759
NCBI entrez gene - 192318     See in Manteia.
RefSeq - NM_153661
RefSeq Peptide - NP_705947
swissprot - Q6NWB3
ZFIN ID - ZDB-GENE-020419-22
Ensembl - ENSDARG00000018574
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SF3B4ENSGALG00000013352Gallus gallus
 SF3B4ENSG00000143368Homo sapiens
 Sf3b4ENSMUSG00000068856Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034158  SF3B4, RNA recognition motif 1
 IPR034159  SF3B4, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000084 yolk yolk circular , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk decreased length , abnormal
trunk necrotic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr