ENSMUSG00000068856


Mus musculus

Features
Gene ID: ENSMUSG00000068856
  
Biological name :Sf3b4
  
Synonyms : Q8QZY9 / Sf3b4 / Splicing factor 3B subunit 4
  
Possible biological names infered from orthology : Q15427
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: F2.1
Gene start: 96172332
Gene end: 96177564
  
Corresponding Affymetrix probe sets: 10429452 (MoGene1.0st)   10494369 (MoGene1.0st)   1424619_at (Mouse Genome 430 2.0 Array)   1436784_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000075709
NCBI entrez gene - 107701     See in Manteia.
MGI - MGI:109580
RefSeq - NM_153053
RefSeq Peptide - NP_694693
swissprot - Q8QZY9
Ensembl - ENSMUSG00000068856
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b4ENSDARG00000018574Danio rerio
 SF3B4ENSGALG00000013352Gallus gallus
 SF3B4ENSG00000143368Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034158  SF3B4, RNA recognition motif 1
 IPR034159  SF3B4, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0048026 positive regulation of mRNA splicing, via spliceosome IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex ISO
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr