ENSGALG00000013352


Gallus gallus

Features
Gene ID: ENSGALG00000013352
  
Biological name :SF3B4
  
Synonyms : SF3B4 / splicing factor 3b subunit 4
  
Possible biological names infered from orthology : Q15427 / Q8QZY9
  
Species: Gallus gallus
  
Chr. number: 25
Strand: 1
Band:
Gene start: 933679
Gene end: 938571
  
Corresponding Affymetrix probe sets: Gga.11467.1.S1_x_at (Chicken Array)   GgaAffx.24181.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000021749
NCBI entrez gene - 426042     See in Manteia.
RefSeq - XM_423721
swissprot - H9L019
Ensembl - ENSGALG00000013352
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sf3b4ENSDARG00000018574Danio rerio
 SF3B4ENSG00000143368Homo sapiens
 Sf3b4ENSMUSG00000068856Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048026 positive regulation of mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr