ENSDARG00000019004


Danio rerio

Features
Gene ID: ENSDARG00000019004
  
Biological name :smarcd1
  
Synonyms : smarcd1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
  
Possible biological names infered from orthology : Q61466 / Q96GM5
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 7009062
Gene end: 7025393
  
Corresponding Affymetrix probe sets: Dr.3403.1.S1_at (Zebrafish Array)   NM_198358_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000009407
NCBI entrez gene - 323115     See in Manteia.
RefSeq - NM_198358
RefSeq Peptide - NP_938172
swissprot - Q802C8
ZFIN ID - ZDB-GENE-030131-1835
Ensembl - ENSDARG00000019004
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCD1ENSGALG00000029247Gallus gallus
 Q96GM5ENSG00000066117Homo sapiens
 Q61466ENSMUSG00000023018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smarcd3a / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3a / Q6P9Z1* / Q6STE5* / SMARCD3* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000003878670
smarcd3b / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b / Q6P9Z1* / Q6STE5* / SMARCD3* / SWI/SNF related, matrix associated, actin depe...ENSDARG0000001996970
smarcd2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 / Q92925* / Q99JR8*ENSDARG0000008887763


Protein motifs (from Interpro)
Interpro ID Name
 IPR003121  SWIB/MDM2 domain
 IPR019835  SWIB domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002244 hematopoietic progenitor cell differentiation IMP
 biological_processGO:0021510 spinal cord development IMP
 biological_processGO:0060216 definitive hemopoiesis IMP
 biological_processGO:0061053 somite development IMP
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain morphology , abnormal
Show

 ZFA:0000075 spinal cord spinal cord decreased size , abnormal
spinal cord decreased thickness , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000114 heart heart morphology , abnormal
Show

 ZFA:0000155 somite somite morphology , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism apoptotic , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk curved ventral , abnormal
Show

 ZFA:0009091 melanocyte melanocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr