ENSGALG00000029247


Gallus gallus

Features
Gene ID: ENSGALG00000029247
  
Biological name :SMARCD1
  
Synonyms : SMARCD1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
  
Possible biological names infered from orthology : Q61466 / Q96GM5
  
Species: Gallus gallus
  
Chr. number: 33
Strand: -1
Band:
Gene start: 300379
Gene end: 307956
  
Corresponding Affymetrix probe sets: GgaAffx.3872.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045740
Ensembl peptide - ENSGALP00000055859
NCBI entrez gene - 426882     See in Manteia.
RefSeq - XM_424488
swissprot - A0A1D5NZC2
swissprot - A0A1D5PSH3
Ensembl - ENSGALG00000029247
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarcd1ENSDARG00000019004Danio rerio
 Q96GM5ENSG00000066117Homo sapiens
 Q61466ENSMUSG00000023018Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMARCD3 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 / Q6P9Z1* / Q6STE5*ENSGALG0000004313762
SMARCD2 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 / Q92925* / Q99JR8*ENSGALG0000002930460


Protein motifs (from Interpro)
Interpro ID Name
 IPR003121  SWIB/MDM2 domain
 IPR019835  SWIB domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006337 nucleosome disassembly IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0048096 chromatin-mediated maintenance of transcription IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0032947 protein-containing complex scaffold activity IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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