ENSDARG00000019038


Danio rerio

Features
Gene ID: ENSDARG00000019038
  
Biological name :sgsm3
  
Synonyms : Q7T2D0 / sgsm3 / small G protein signaling modulator 3
  
Possible biological names infered from orthology : Q8VCZ6 / Q96HU1
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 33461075
Gene end: 33494163
  
Corresponding Affymetrix probe sets: Dr.411.1.A1_at (Zebrafish Array)   NM_213330_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000017428
Ensembl peptide - ENSDARP00000126296
NCBI entrez gene - 406635     See in Manteia.
RefSeq - NM_213330
RefSeq Peptide - NP_998495
swissprot - I3ITM5
swissprot - B2GRW4
swissprot - Q7T2D0
ZFIN ID - ZDB-GENE-040426-2635
Ensembl - ENSDARG00000019038
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SGSM3ENSGALG00000012033Gallus gallus
 SGSM3ENSG00000100359Homo sapiens
 Sgsm3ENSMUSG00000042303Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tbc1d9 / TBC1 domain family, member 9 (with GRAM domain) / Q3UYK3* / Q6ZT07* / TBC1 domain family member 9*ENSDARG0000005990019
tbc1d9 / TBC1 domain family, member 9 (with GRAM domain) / Q66K14* / TBC1D9B* / TBC1 domain family member 9B*ENSDARG0000004362719
B0R0W9 / TBC1D8B / si:dkey-110k5.6 / Q0IIM8* / A3KGB4* / TBC1 domain family member 8B*ENSDARG0000006219217
LO018176.1 / O95759* / TBC1D8* / TBC1 domain family member 8*ENSDARG0000010449317
tbc1d2 / TBC1 domain family, member 2 / B1AVH7* / Q9BYX2* / TBC1 domain family member 2A *ENSDARG0000007130416
tbc1d2b / TBC1 domain family, member 2B / Q3U0J8* / Q9UPU7*ENSDARG0000006198616
tbc1d30 / TBC1 domain family, member 30 / Q69ZT9* / Q9Y2I9*ENSDARG0000007528113


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR001452  SH3 domain
 IPR004012  RUN domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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