ENSDARG00000019179


Danio rerio

Features
Gene ID: ENSDARG00000019179
  
Biological name :lrit1a
  
Synonyms : leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a / lrit1a
  
Possible biological names infered from orthology : leucine rich repeat, Ig-like and transmembrane domains 1 / Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1 / LRIT1 / Q8K099 / Q9P2V4
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 29462249
Gene end: 29467558
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000114768
NCBI entrez gene - 553943     See in Manteia.
RefSeq - NM_001018164
RefSeq Peptide - NP_001018174
swissprot - B8A5X5
ZFIN ID - ZDB-GENE-040924-5
Ensembl - ENSDARG00000019179
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRIT1ENSGALG00000002303Gallus gallus
 LRIT1ENSG00000148602Homo sapiens
 Lrit1ENSMUSG00000041044Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lrit1b / leucine-rich repeat, immunoglobulin-like and transmembrane domains 1b / LRIT1* / Q9P2V4* / leucine rich repeat, Ig-like and transmembrane domains 1*ENSDARG0000009940669
lrit3a / info leucine-rich repeat, immunoglobulin-like and transmembrane domains 3a / LRIT3* / Q3SXY7* / W8DXL4* / leucine rich repeat, Ig-like and transmembrane domains 3* / Leucine-rich r...ENSDARG0000005546336
lrit3b / leucine-rich repeat, immunoglobulin-like and transmembrane domains 3b / LRIT3* / Q3SXY7* / W8DXL4* / leucine rich repeat, Ig-like and transmembrane domains 3* / Leucine-rich repeat...ENSDARG0000005705424
lrit2 / leucine-rich repeat, immunoglobulin-like and transmembrane domains 2 / A6NDA9* / Q6PFC5* / leucine rich repeat, Ig-like and transmembrane domains 2* / Leucine-rich repeat, immunoglo...ENSDARG0000003062624
islr2 / immunoglobulin superfamily containing leucine-rich repeat 2 / ISLR* / O14498* / Q5RKR3* / Q6GU68* / Q6UXK2* / immunoglobulin superfamily containing leucine rich repeat* / Immunoglob...ENSDARG0000005187519


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR003961  Fibronectin type III
 IPR007110  Immunoglobulin-like domain
 IPR013098  Immunoglobulin I-set
 IPR013783  Immunoglobulin-like fold
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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