Manteia

ENSDARG00000019181

Danio rerio

Features

Gene ID:	ENSDARG00000019181

Biological name :	rpsa

Synonyms :	Q803F6 / ribosomal protein SA / rpsa

Possible biological names infered from orthology :	40S ribosomal protein SA / P08865 / P14206

Species:	Danio rerio

Chr. number:	6
Strand:	-1
Band:
Gene start:	7709662
Gene end:	7720332

Corresponding Affymetrix probe sets:	Dr.1065.1.S1_at (Zebrafish Array)

Cross references:	Ensembl peptide - ENSDARP00000123183 Ensembl peptide - ENSDARP00000155439 Ensembl peptide - ENSDARP00000101074 NCBI entrez gene - 394027 See in Manteia. swissprot - B2GNT1 swissprot - J9JI05 swissprot - Q803F6 ZFIN ID - ZDB-GENE-040426-811 Ensembl - ENSDARG00000019181

See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Paralog prediction (from Ensembl)

Paralog name

Similarity(%)

No match

Protein motifs (from Interpro)

Interpro ID	Name
IPR001865	Ribosomal protein S2
IPR005707	Ribosomal protein S2, eukaryotic/archaeal
IPR018130	Ribosomal protein S2, conserved site
IPR023591	Ribosomal protein S2, flavodoxin-like domain superfamily
IPR027498	Ribosomal protein S2, eukaryotic
IPR027504	40S ribosomal protein SA
IPR032281	40S ribosomal protein SA, C-terminal domain

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
biological_process	GO:0000028	ribosomal small subunit assembly	IEA
biological_process	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IBA
biological_process	GO:0000461	endonucleolytic cleavage to generate mature 3"-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IBA
biological_process	GO:0006407	rRNA export from nucleus	IBA
biological_process	GO:0006412	translation	IEA
biological_process	GO:0007155	cell adhesion	IEA
cellular_component	GO:0005622	intracellular	IEA
cellular_component	GO:0005634	nucleus	IEA
cellular_component	GO:0005737	cytoplasm	IEA
cellular_component	GO:0005840	ribosome	IEA
cellular_component	GO:0005886	plasma membrane	IEA
cellular_component	GO:0015935	small ribosomal subunit	IEA
cellular_component	GO:0016020	membrane	IEA
cellular_component	GO:0022627	cytosolic small ribosomal subunit	IEA
cellular_component	GO:0030686	90S preribosome	IBA
molecular_function	GO:0003735	structural constituent of ribosome	IEA
molecular_function	GO:0005055	laminin receptor activity	IEA
molecular_function	GO:0043236	laminin binding	IEA

Pathways (from Reactome)

Pathway description

Phenotype (from MGI, Zfin or HPO)

ID	Phenotype	Definition	Genetic BG
ZFA:0000008	brain	brain necrotic , abnormal	Show
ZFA:0000012	central nervous system	central nervous system necrotic , abnormal	Show
ZFA:0000042	midbrain hindbrain boundary	midbrain hindbrain boundary quality , abnormal midbrain hindbrain boundary decreased thickness , abnormal	Show
ZFA:0000054	pericardium	pericardium edematous , abnormal	Show
ZFA:0000084	yolk	yolk circular , abnormal yolk grey , abnormal	Show
ZFA:0000106	extension	extension decreased thickness , abnormal	Show
ZFA:0000107	eye	eye decreased size , abnormal	Show
ZFA:0000112	gut	gut quality , abnormal gut hypoplastic , abnormal	Show
ZFA:0000114	heart	heart quality , abnormal	Show
ZFA:0000123	liver	liver quality , abnormal liver hypoplastic , abnormal	Show
ZFA:0001094	whole organism	whole organism decreased size , abnormal	Show
ZFA:0001114	head	head flat , abnormal head decreased size , abnormal	Show
ZFA:0001115	trunk	trunk necrotic , abnormal	Show

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

0 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr