ENSGALG00000035079


Gallus gallus

Features
Gene ID: ENSGALG00000035079
  
Biological name :RPSA
  
Synonyms : 40S ribosomal protein SA / P50890 / RPSA
  
Possible biological names infered from orthology : P08865 / P14206 / ribosomal protein SA
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 44510182
Gene end: 44515049
  
Corresponding Affymetrix probe sets: Gga.16564.1.S1_a_at (Chicken Array)   Gga.16564.2.S1_s_at (Chicken Array)   Gga.16564.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000059427
Ensembl peptide - ENSGALP00000064568
Ensembl peptide - ENSGALP00000063987
Ensembl peptide - ENSGALP00000063164
Ensembl peptide - ENSGALP00000063032
Ensembl peptide - ENSGALP00000062389
Ensembl peptide - ENSGALP00000062262
Ensembl peptide - ENSGALP00000044450
Ensembl peptide - ENSGALP00000051747
Ensembl peptide - ENSGALP00000056649
NCBI entrez gene - 395181     See in Manteia.
RefSeq - NM_001007823
RefSeq Peptide - NP_001007824
swissprot - A0A1L1RW24
swissprot - A0A1L1RU85
swissprot - A0A1L1RL09
swissprot - A0A1D5PG28
swissprot - A0A1L1S0B1
swissprot - P50890
swissprot - A0A1L1RWE5
Ensembl - ENSGALG00000035079
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpsaENSDARG00000019181Danio rerio
 RPSAENSG00000168028Homo sapiens
 RpsaENSMUSG00000032518Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001865  Ribosomal protein S2
 IPR005707  Ribosomal protein S2, eukaryotic/archaeal
 IPR018130  Ribosomal protein S2, conserved site
 IPR023591  Ribosomal protein S2, flavodoxin-like domain superfamily
 IPR027498  Ribosomal protein S2, eukaryotic
 IPR027504  40S ribosomal protein SA
 IPR032281  40S ribosomal protein SA, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000461 endonucleolytic cleavage to generate mature 3"-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006407 rRNA export from nucleus IBA
 biological_processGO:0006412 translation IBA
 biological_processGO:0007155 cell adhesion IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0015935 small ribosomal subunit IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 cellular_componentGO:0030686 90S preribosome IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0005055 laminin receptor activity IEA
 molecular_functionGO:0043236 laminin binding ISS


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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