ENSG00000168028


Homo sapiens

Features
Gene ID: ENSG00000168028
  
Biological name :RPSA
  
Synonyms : P08865 / ribosomal protein SA / RPSA
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: p22.1
Gene start: 39406689
Gene end: 39412542
  
Corresponding Affymetrix probe sets: 213801_x_at (Human Genome U133 Plus 2.0 Array)   224348_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000346067
Ensembl peptide - ENSP00000410848
Ensembl peptide - ENSP00000396716
Ensembl peptide - ENSP00000389351
NCBI entrez gene - 3921     See in Manteia.
OMIM - 150370
RefSeq - NM_002295
RefSeq - NM_001304288
RefSeq Peptide - NP_001291217
RefSeq Peptide - NP_002286
swissprot - C9J9K3
swissprot - P08865
swissprot - A0A0C4DG17
swissprot - A0A024R2P0
swissprot - F8WD59
Ensembl - ENSG00000168028
  
Related genetic diseases (OMIM): 271400 - Asplenia, isolated congenital, 271400
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpsaENSDARG00000019181Danio rerio
 RPSAENSGALG00000035079Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001865  Ribosomal protein S2
 IPR005707  Ribosomal protein S2, eukaryotic/archaeal
 IPR018130  Ribosomal protein S2, conserved site
 IPR023591  Ribosomal protein S2, flavodoxin-like domain superfamily
 IPR027498  Ribosomal protein S2, eukaryotic
 IPR027504  40S ribosomal protein SA
 IPR032281  40S ribosomal protein SA, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IEA
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000461 endonucleolytic cleavage to generate mature 3"-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006407 rRNA export from nucleus IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0019083 viral transcription TAS
 biological_processGO:0046718 viral entry into host cell IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0015935 small ribosomal subunit IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IEA
 cellular_componentGO:0030686 90S preribosome IBA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0001618 virus receptor activity IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0005055 laminin receptor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043022 ribosome binding IPI
 molecular_functionGO:0043236 laminin binding IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0001438 Abnormality of the abdomen "Abnormality of the abdomen ("belly"), that is, the part of the body between the pelvis and the thorax." [HPO:curators]
Show

 HP:0001746 Asplenia "Absence (aplasia) of the spleen." [HPO:curators]
Show

 HP:0001894 Thrombocytosis 
Show

 HP:0001939 Metabolism abnormality 
Show

 HP:0003593 Early onset 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr