ENSDARG00000019881


Danio rerio

Features
Gene ID: ENSDARG00000019881
  
Biological name :bsg
  
Synonyms : basigin / bsg
  
Possible biological names infered from orthology : basigin (Ok blood group) / P18572 / P35613
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 18929412
Gene end: 18946453
  
Corresponding Affymetrix probe sets: Dr.16700.1.A1_at (Zebrafish Array)   Dr.2447.1.S1_at (Zebrafish Array)   NM_198142_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000139566
Ensembl peptide - ENSDARP00000018579
Ensembl peptide - ENSDARP00000096165
Ensembl peptide - ENSDARP00000107195
Ensembl peptide - ENSDARP00000130496
NCBI entrez gene - 337692     See in Manteia.
RefSeq - NM_001312882
RefSeq - NM_198142
RefSeq - XM_009296228
RefSeq Peptide - NP_001299811
RefSeq Peptide - NP_937785
swissprot - Q1LVH3
swissprot - Q6PH44
swissprot - F1R8Z4
swissprot - A0A0R4ICR8
swissprot - Q1LVH2
ZFIN ID - ZDB-GENE-030131-9638
Ensembl - ENSDARG00000019881
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BSGENSGALG00000001328Gallus gallus
 BSGENSG00000172270Homo sapiens
 BsgENSMUSG00000023175Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nptnb / neuroplastin b / NPTN* / P97300* / Q9Y639* / neuroplastin*ENSDARG0000004386440
nptna / neuroplastin a / NPTN* / Q9Y639* / neuroplastin*ENSDARG0000010300227
si:ch211-261c8.5 / EMB* / P21995* / Q6PCB8* / embigin*ENSDARG0000005948519


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR009151  Basigin
 IPR013151  Immunoglobulin
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Basigin interactions
Integrin cell surface interactions
Proton-coupled monocarboxylate transport
Pyruvate metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000108 fin fin decreased size , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001702 apical ectodermal ridge apical ectodermal ridge decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr