ENSDARG00000020046


Danio rerio

Features
Gene ID: ENSDARG00000020046
  
Biological name :ahr1a
  
Synonyms : ahr1a / aryl hydrocarbon receptor 1a
  
Possible biological names infered from orthology : AC019117.3 / AHR / aryl hydrocarbon receptor / aryl hydrocarbon receptor isoform 2 / P35869
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 20012190
Gene end: 20038263
  
Corresponding Affymetrix probe sets: Dr.17547.1.S1_at (Zebrafish Array)   NM_131028_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116861
Ensembl peptide - ENSDARP00000017676
NCBI entrez gene - 246224     See in Manteia.
RefSeq - XM_021466612
RefSeq - NM_131028
RefSeq Peptide - NP_571103
swissprot - F1RBN7
swissprot - F1R9S5
ZFIN ID - ZDB-GENE-020531-2
Ensembl - ENSDARG00000020046
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AHRENSGALG00000010836Gallus gallus
 AC019117.3ENSG00000283321Homo sapiens
 AHRENSG00000106546Homo sapiens
 AhrENSMUSG00000019256Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ahr1b / aryl hydrocarbon receptor 1bENSDARG0000002353737
ahr2 / aryl hydrocarbon receptor 2ENSDARG0000002183334
ahrrb / aryl-hydrocarbon receptor repressor b / AHRR* / A9YTQ3* / aryl-hydrocarbon receptor repressor*ENSDARG0000005261819
CABZ01114318.1 / AHRR* / A9YTQ3* / aryl-hydrocarbon receptor repressor*ENSDARG0000009970210


Protein motifs (from Interpro)
Interpro ID Name
 IPR000014  PAS domain
 IPR001067  Nuclear translocator
 IPR001610  PAC motif
 IPR011598  Myc-type, basic helix-loop-helix (bHLH) domain
 IPR013655  PAS fold-3
 IPR013767  PAS fold
 IPR033348  Aryl hydrocarbon receptor


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0009410 response to xenobiotic stimulus IEA
 biological_processGO:0071407 cellular response to organic cyclic compound IGI
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0034751 aryl hydrocarbon receptor complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
Phase I - Functionalization of compounds
Endogenous sterols
Xenobiotics
Aryl hydrocarbon receptor signalling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000014 dorsal aorta dorsal aorta increased amount , abnormal
Show

 ZFA:0000477 posterior cardinal vein posterior cardinal vein increased amount , abnormal
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 ZFA:0001052 primordial hindbrain channel primordial hindbrain channel increased amount , abnormal
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 ZFA:0001054 lateral dorsal aorta lateral dorsal aorta increased amount , abnormal
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 ZFA:0001285 intersegmental vessel intersegmental vessel increased amount , abnormal
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 ZFA:0005020 central artery central artery increased amount , abnormal
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 ZFA:0005025 dorsal longitudinal anastomotic vessel dorsal longitudinal anastomotic vessel increased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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