ENSDARG00000020730


Danio rerio

Features
Gene ID: ENSDARG00000020730
  
Biological name :smpd4
  
Synonyms : smpd4 / sphingomyelin phosphodiesterase 4
  
Possible biological names infered from orthology : Q6ZPR5 / Q9NXE4
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 18907102
Gene end: 18926900
  
Corresponding Affymetrix probe sets: Dr.3569.1.S1_at (Zebrafish Array)   NM_213355_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000137006
Ensembl peptide - ENSDARP00000157312
Ensembl peptide - ENSDARP00000146929
Ensembl peptide - ENSDARP00000022632
Ensembl peptide - ENSDARP00000107263
Ensembl peptide - ENSDARP00000112609
Ensembl peptide - ENSDARP00000122303
NCBI entrez gene - 793294     See in Manteia.
RefSeq - NM_213355
RefSeq Peptide - NP_998520
swissprot - F1QUP0
swissprot - E9QD63
swissprot - F1R680
swissprot - A0A0R4IS01
ZFIN ID - ZDB-GENE-040426-2672
Ensembl - ENSDARG00000020730
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000006455Gallus gallus
 SMPD4ENSG00000136699Homo sapiens
 Smpd4ENSMUSG00000005899Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024129  Sphingomyelin phosphodiesterase 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0050290 sphingomyelin phosphodiesterase D activity IEA


Pathways (from Reactome)
Pathway description
Glycosphingolipid metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr