ENSDARG00000021120


Danio rerio

Features
Gene ID: ENSDARG00000021120
  
Biological name :ndc1
  
Synonyms : ndc1 / NDC1 transmembrane nucleoporin
  
Possible biological names infered from orthology : Nucleoporin NDC1 / Q8VCB1 / Q9BTX1
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 26576853
Gene end: 26590628
  
Corresponding Affymetrix probe sets: Dr.25587.1.A1_at (Zebrafish Array)   NM_199943_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000016349
NCBI entrez gene - 335236     See in Manteia.
RefSeq - NM_199943
RefSeq Peptide - NP_956237
swissprot - B0S5I6
ZFIN ID - ZDB-GENE-030131-7176
Ensembl - ENSDARG00000021120
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NDC1ENSGALG00000031606Gallus gallus
 NDC1ENSG00000058804Homo sapiens
 Ndc1ENSMUSG00000028614Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019049  Nucleoporin protein Ndc1-Nup


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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