ENSGALG00000031606


Gallus gallus

Features
Gene ID: ENSGALG00000031606
  
Biological name :NDC1
  
Synonyms : NDC1 / NDC1 transmembrane nucleoporin
  
Possible biological names infered from orthology : Nucleoporin NDC1 / Q8VCB1 / Q9BTX1
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 25163562
Gene end: 25179731
  
Corresponding Affymetrix probe sets: GgaAffx.23312.1.S1_at (Chicken Array)   GgaAffx.23312.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049802
Ensembl peptide - ENSGALP00000063764
Ensembl peptide - ENSGALP00000062003
Ensembl peptide - ENSGALP00000059264
Ensembl peptide - ENSGALP00000053930
Ensembl peptide - ENSGALP00000051357
NCBI entrez gene - 772284     See in Manteia.
RefSeq - XM_015291192
RefSeq - XM_015291193
RefSeq - XM_015291194
swissprot - A0A1D5PM57
swissprot - A0A1L1RY41
swissprot - A0A1D5PAN9
swissprot - A0A1D5PEZ5
swissprot - A0A1L1RT66
swissprot - A0A1L1RKH4
Ensembl - ENSGALG00000031606
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ndc1ENSDARG00000021120Danio rerio
 NDC1ENSG00000058804Homo sapiens
 Ndc1ENSMUSG00000028614Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019049  Nucleoporin protein Ndc1-Nup


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007129 synapsis IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0031081 nuclear pore distribution IEA
 biological_processGO:0051292 nuclear pore complex assembly IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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