ENSDARG00000021945


Danio rerio

Features
Gene ID: ENSDARG00000021945
  
Biological name :ddx23
  
Synonyms : ddx23 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
  
Possible biological names infered from orthology : DEAD-box helicase 23 / Q9BUQ8
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 14193547
Gene end: 14216506
  
Corresponding Affymetrix probe sets: Dr.2652.1.S1_at (Zebrafish Array)   NM_199882_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000007528
NCBI entrez gene - 334283     See in Manteia.
RefSeq - NM_199882
RefSeq Peptide - NP_956176
swissprot - Q6P9Z2
ZFIN ID - ZDB-GENE-030131-6215
Ensembl - ENSDARG00000021945
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX23ENSG00000174243Homo sapiens
 Ddx23ENSMUSG00000003360Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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