ENSMUSG00000003360


Mus musculus

Features
Gene ID: ENSMUSG00000003360
  
Biological name :Ddx23
  
Synonyms : Ddx23 / DEAD-box helicase 23
  
Possible biological names infered from orthology : Q9BUQ8
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: F1
Gene start: 98645134
Gene end: 98662894
  
Corresponding Affymetrix probe sets: 10432215 (MoGene1.0st)   1430050_at (Mouse Genome 430 2.0 Array)   1439952_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000003450
Ensembl peptide - ENSMUSP00000125168
NCBI entrez gene - 74351     See in Manteia.
MGI - MGI:1921601
RefSeq - NM_001080981
RefSeq - XM_006521493
RefSeq Peptide - NP_001074450
swissprot - E0CXN3
swissprot - D3Z0M9
Ensembl - ENSMUSG00000003360
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx23ENSDARG00000021945Danio rerio
 DDX23ENSG00000174243Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000375 RNA splicing, via transesterification reactions IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005682 U5 snRNP ISO
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex ISO
 cellular_componentGO:0071013 catalytic step 2 spliceosome ISO
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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