ENSDARG00000022659


Danio rerio

Features
Gene ID: ENSDARG00000022659
  
Biological name :snx4
  
Synonyms : snx4 / sorting nexin 4
  
Possible biological names infered from orthology : O95219 / Q91YJ2
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 38588081
Gene end: 38621202
  
Corresponding Affymetrix probe sets: Dr.4994.1.A1_at (Zebrafish Array)   NM_001014346_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000033122
Ensembl peptide - ENSDARP00000116258
NCBI entrez gene - 323203     See in Manteia.
RefSeq - NM_001014346
RefSeq Peptide - NP_001014368
swissprot - B0S5M1
swissprot - B0S5M0
ZFIN ID - ZDB-GENE-030131-1923
Ensembl - ENSDARG00000022659
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX4ENSGALG00000012052Gallus gallus
 SNX4ENSG00000114520Homo sapiens
 Snx4ENSMUSG00000022808Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx7 / sorting nexin 7 / Q9CY18* / Q9UNH6*ENSDARG0000010518522
snx30 / sorting nexin family member 30 / Q5VWJ9* / Q8CE50* / Sorting nexin-30 *ENSDARG0000006960121


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain
 IPR034783  Sorting nexin-4
 IPR034902  Sorting nexin 4, PX domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006897 endocytosis IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016050 vesicle organization IBA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0019898 extrinsic component of membrane IBA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr