ENSDARG00000023298


Danio rerio

Features
Gene ID: ENSDARG00000023298
  
Biological name :rps27.1
  
Synonyms : ribosomal protein S27, isoform 1 / rps27.1
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 8743260
Gene end: 8748571
  
Corresponding Affymetrix probe sets: Dr.24633.1.S1_at (Zebrafish Array)   Dr.24633.1.S1_a_at (Zebrafish Array)   Dr.24633.2.S1_a_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000029079
NCBI entrez gene - 554155     See in Manteia.
RefSeq - NM_001159528
RefSeq Peptide - NP_001153000
swissprot - Q4VBV2
ZFIN ID - ZDB-GENE-050522-549
Ensembl - ENSDARG00000023298
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rps27.2 / ribosomal protein S27, isoform 2ENSDARG0000005547599
CABZ01079011.1 / RPS27* / P42677* / ribosomal protein S27*ENSDARG0000010051390


Protein motifs (from Interpro)
Interpro ID Name
 IPR000592  Ribosomal protein S27e
 IPR011332  Zinc-binding ribosomal protein
 IPR023407  Ribosomal protein S27e, zinc-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0006412 translation IBA
 biological_processGO:0030218 erythrocyte differentiation IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain malformed , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
Show

 ZFA:0001117 post-vent region post-vent region bent , abnormal
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 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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