ENSDARG00000023299


Danio rerio

Features
Gene ID: ENSDARG00000023299
  
Biological name :snu13b
  
Synonyms : snu13b / SNU13 homolog, small nuclear ribonucleoprotein b (U4/U6.U5)
  
Possible biological names infered from orthology : P55769 / Q9D0T1 / small nuclear ribonucleoprotein 13 / SNU13 / SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 10443785
Gene end: 10447178
  
Corresponding Affymetrix probe sets: Dr.13635.1.S1_at (Zebrafish Array)   NM_199535_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000038446
NCBI entrez gene - 321114     See in Manteia.
RefSeq - NM_199535
RefSeq Peptide - NP_955829
swissprot - Q7ZV23
ZFIN ID - ZDB-GENE-030131-9670
Ensembl - ENSDARG00000023299
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNU13ENSGALG00000011931Gallus gallus
 SNU13ENSG00000100138Homo sapiens
 Snu13ENSMUSG00000063480Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snu13a / SNU13 homolog, small nuclear ribonucleoprotein a (U4/U6.U5) / SNU13* / P55769* / small nuclear ribonucleoprotein 13*ENSDARG0000006987897


Protein motifs (from Interpro)
Interpro ID Name
 IPR002415  H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
 IPR004037  Ribosomal protein L7Ae conserved site
 IPR004038  Ribosomal protein L7Ae/L30e/S12e/Gadd45
 IPR018492  Ribosomal protein L7Ae/L8/Nhp2 family
 IPR029064  50S ribosomal protein L30e-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0000470 maturation of LSU-rRNA IBA
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0061053 somite development IMP
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0031428 box C/D snoRNP complex IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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