ENSMUSG00000063480


Mus musculus

Features
Gene ID: ENSMUSG00000063480
  
Biological name :Snu13
  
Synonyms : Q9D0T1 / Snu13 / SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5)
  
Possible biological names infered from orthology : P55769 / small nuclear ribonucleoprotein 13
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: E1
Gene start: 82040525
Gene end: 82047598
  
Corresponding Affymetrix probe sets: 10430811 (MoGene1.0st)   10444800 (MoGene1.0st)   10541482 (MoGene1.0st)   10585091 (MoGene1.0st)   1416972_at (Mouse Genome 430 2.0 Array)   1416973_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000091840
NCBI entrez gene - 100862468     See in Manteia.
NCBI entrez gene - 20826     See in Manteia.
MGI - MGI:893586
RefSeq - NM_011482
RefSeq Peptide - NP_035612
swissprot - Q9D0T1
Ensembl - ENSMUSG00000063480
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snu13aENSDARG00000069878Danio rerio
 snu13bENSDARG00000023299Danio rerio
 SNU13ENSGALG00000011931Gallus gallus
 SNU13ENSG00000100138Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002415  H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
 IPR004037  Ribosomal protein L7Ae conserved site
 IPR004038  Ribosomal protein L7Ae/L30e/S12e/Gadd45
 IPR018492  Ribosomal protein L7Ae/L8/Nhp2 family
 IPR029064  50S ribosomal protein L30e-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0000470 maturation of LSU-rRNA IBA
 biological_processGO:0000492 box C/D snoRNP assembly IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007338 single fertilization IDA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0001651 dense fibrillar component IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005690 U4atac snRNP IEA
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0005886 plasma membrane ISS
 cellular_componentGO:0031428 box C/D snoRNP complex IMP
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IEA
 cellular_componentGO:0071005 U2-type precatalytic spliceosome IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030515 snoRNA binding IEA
 molecular_functionGO:0030621 U4 snRNA binding IEA
 molecular_functionGO:0030622 U4atac snRNA binding IEA
 molecular_functionGO:0034511 U3 snoRNA binding IEA
 molecular_functionGO:0034512 box C/D snoRNA binding IMP
 molecular_functionGO:0051117 ATPase binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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