ENSG00000100138


Homo sapiens

Features
Gene ID: ENSG00000100138
  
Biological name :SNU13
  
Synonyms : P55769 / small nuclear ribonucleoprotein 13 / SNU13
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 22
Strand: -1
Band: q13.2
Gene start: 41673930
Gene end: 41690504
  
Corresponding Affymetrix probe sets: 201076_at (Human Genome U133 Plus 2.0 Array)   201077_s_at (Human Genome U133 Plus 2.0 Array)   230443_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000347401
Ensembl peptide - ENSP00000383989
Ensembl peptide - ENSP00000383949
Ensembl peptide - ENSP00000215956
NCBI entrez gene - 4809     See in Manteia.
OMIM - 601304
RefSeq - NM_001003796
RefSeq - NM_005008
RefSeq Peptide - NP_004999
RefSeq Peptide - NP_001003796
swissprot - Q6FHM6
swissprot - P55769
swissprot - B1AHD1
Ensembl - ENSG00000100138
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snu13aENSDARG00000069878Danio rerio
 snu13bENSDARG00000023299Danio rerio
 SNU13ENSGALG00000011931Gallus gallus
 Snu13ENSMUSG00000063480Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002415  H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote
 IPR004037  Ribosomal protein L7Ae conserved site
 IPR004038  Ribosomal protein L7Ae/L30e/S12e/Gadd45
 IPR018492  Ribosomal protein L7Ae/L8/Nhp2 family
 IPR029064  50S ribosomal protein L30e-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0000470 maturation of LSU-rRNA IBA
 biological_processGO:0000492 box C/D snoRNP assembly IEA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007338 single fertilization IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0001651 dense fibrillar component IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005690 U4atac snRNP IDA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0031428 box C/D snoRNP complex IEA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0046540 U4/U6 x U5 tri-snRNP complex IDA
 cellular_componentGO:0071005 U2-type precatalytic spliceosome IDA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030515 snoRNA binding IDA
 molecular_functionGO:0030621 U4 snRNA binding IDA
 molecular_functionGO:0030622 U4atac snRNA binding IDA
 molecular_functionGO:0034511 U3 snoRNA binding IDA
 molecular_functionGO:0034512 box C/D snoRNA binding IDA
 molecular_functionGO:0051117 ATPase binding IPI


Pathways (from Reactome)
Pathway description
rRNA modification in the nucleus and cytosol
Major pathway of rRNA processing in the nucleolus and cytosol
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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