ENSDARG00000023542


Danio rerio

Features
Gene ID: ENSDARG00000023542
  
Biological name :cdh7a
  
Synonyms : cadherin 7a / cdh7a
  
Possible biological names infered from orthology : cadherin 7 / CDH7 / Q8BM92 / Q9ULB5
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 27010439
Gene end: 27094653
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000035549
NCBI entrez gene - 567704     See in Manteia.
RefSeq - NM_001077448
RefSeq Peptide - NP_001070916
swissprot - B0S6D4
ZFIN ID - ZDB-GENE-061019-3
Ensembl - ENSDARG00000023542
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDH7ENSGALG00000013782Gallus gallus
 CDH7ENSG00000081138Homo sapiens
 Cdh7ENSMUSG00000026312Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cdh11 / cadherin 11, type 2, OB-cadherin (osteoblast) / P55287* / P55288* / cadherin 11*ENSDARG0000002144256
CDH18 / cadherin 18 / Q13634*ENSDARG0000010276954
cdh10a / cadherin 10, type 2a (T2-cadherin) / CDH6* / CDH9* / CDH10* / Q9Y6N8* / P70408* / P97326* / Q9ULB4* / P55285* / cadherin 9* / cadherin 6* / cadherin 10*ENSDARG0000005584354
cdh6 / cadherin 6 / CDH9* / CDH10* / Q9Y6N8* / P97326* / Q9ULB4* / P55285* / P70408* / cadherin 9* / cadherin 10*ENSDARG0000001452253
cdh12a / cadherin 12, type 2a (N-cadherin 2) / CDH12* / P55289* / Q5RJH3* / cadherin 12*ENSDARG0000007822651
CDH22 / cadherin 22 / Q9UJ99*ENSDARG0000009882450
cdh7b / cadherin 7b / CDH7* / Q9ULB5* / cadherin 7*ENSDARG0000001764946
LO017650.1 / CDH9* / CDH6* / CDH10* / Q9Y6N8* / P70408* / P97326* / Q9ULB4* / P55285* / cadherin 9* / cadherin 6* / cadherin 10*ENSDARG0000010390343
cdh24b / cadherin 24, type 2b / CDH24* / Q6PFX6* / Q86UP0* / cadherin 24*ENSDARG0000007799643
CABZ01109081.1 / CDH19* / Q9H159* / cadherin 19*ENSDARG0000010059837


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0030903 notochord development IMP
 biological_processGO:0060034 notochord cell differentiation IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000135 notochord notochord morphology , abnormal
notochord undulate , abnormal
notochord epithelial cell irregular spatial pattern , abnormal
notochord epithelial cell variant shape , abnormal
notochord epithelial cell variability of size , abnormal
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 ZFA:0001094 whole organism whole organism undulate , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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