ENSDARG00000014522


Danio rerio

Features
Gene ID: ENSDARG00000014522
  
Biological name :cdh6
  
Synonyms : cadherin 6 / cdh6
  
Possible biological names infered from orthology : cadherin 10 / cadherin 9 / CDH10 / CDH9 / P55285 / P70408 / P97326 / Q9ULB4 / Q9Y6N8
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 28049046
Gene end: 28102264
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000025811
Ensembl peptide - ENSDARP00000117877
NCBI entrez gene - 541393     See in Manteia.
RefSeq - XM_005163632
RefSeq Peptide - NP_001013538
swissprot - Q5WN09
ZFIN ID - ZDB-GENE-050320-92
Ensembl - ENSDARG00000014522
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDH10ENSGALG00000032022Gallus gallus
 CDH6ENSGALG00000012917Gallus gallus
 CDH9ENSGALG00000012923Gallus gallus
 CDH10ENSG00000040731Homo sapiens
 CDH6ENSG00000113361Homo sapiens
 CDH9ENSG00000113100Homo sapiens
 Cdh10ENSMUSG00000022321Mus musculus
 Cdh6ENSMUSG00000039385Mus musculus
 Cdh9ENSMUSG00000025370Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cdh10a / cadherin 10, type 2a (T2-cadherin) / CDH6* / CDH9* / CDH10* / Q9Y6N8* / P70408* / P97326* / Q9ULB4* / P55285* / cadherin 9* / cadherin 6* / cadherin 10*ENSDARG0000005584360
cdh7a / cadherin 7a / CDH7* / Q8BM92* / Q9ULB5* / cadherin 7*ENSDARG0000002354253
CDH18 / cadherin 18 / Q13634*ENSDARG0000010276952
cdh12a / cadherin 12, type 2a (N-cadherin 2) / CDH12* / P55289* / Q5RJH3* / cadherin 12*ENSDARG0000007822651
cdh11 / cadherin 11, type 2, OB-cadherin (osteoblast) / P55287* / P55288* / cadherin 11*ENSDARG0000002144249
LO017650.1 / CDH9* / CDH6* / CDH10* / Q9Y6N8* / P70408* / P97326* / Q9ULB4* / P55285* / cadherin 9* / cadherin 6* / cadherin 10*ENSDARG0000010390346
CDH22 / cadherin 22 / Q9UJ99*ENSDARG0000009882445
cdh24b / cadherin 24, type 2b / CDH24* / Q6PFX6* / Q86UP0* / cadherin 24*ENSDARG0000007799640
cdh7b / cadherin 7b / CDH7* / Q9ULB5* / cadherin 7*ENSDARG0000001764936
CABZ01109081.1 / CDH19* / Q9H159* / cadherin 19*ENSDARG0000010059834


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0048793 pronephros development IMP
 biological_processGO:0060042 retina morphogenesis in camera-type eye IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000024 retinal ganglion cell layer retinal ganglion cell layer morphology , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000106 extension extension decreased length , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000119 retinal inner nuclear layer retinal inner nuclear layer morphology , abnormal
Show

 ZFA:0000151 pronephros pronephros epithelial cell morphology , abnormal
Show

 ZFA:0000152 retina retina structure , abnormal
retina morphology , abnormal
Show

 ZFA:0000435 cranial nerve II cranial nerve II morphology , abnormal
Show

 ZFA:0001094 whole organism whole organism curved , abnormal
whole organism increased curvature , abnormal
whole organism edematous , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
post-vent region bent , abnormal
Show

 ZFA:0001464 retinal outer nuclear layer retinal outer nuclear layer morphology , abnormal
Show

 ZFA:0001557 pronephric glomerulus pronephric glomerulus structure , abnormal
pronephric glomerulus unfused from pronephric glomerulus , abnormal
Show

 ZFA:0009154 eye photoreceptor cell eye photoreceptor cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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