ENSMUSG00000025370


Mus musculus

Features
Gene ID: ENSMUSG00000025370
  
Biological name :Cdh9
  
Synonyms : cadherin 9 / Cdh9
  
Possible biological names infered from orthology : Q9ULB4
  
Species: Mus musculus
  
Chr. number: 15
Strand: 1
Band: A2
Gene start: 16728756
Gene end: 16857094
  
Corresponding Affymetrix probe sets: 10423230 (MoGene1.0st)   1427618_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000026432
Ensembl peptide - ENSMUSP00000154022
NCBI entrez gene - 12565     See in Manteia.
MGI - MGI:107433
RefSeq - XM_011245337
RefSeq - NM_009869
RefSeq - XM_006520019
RefSeq - XM_006520020
RefSeq Peptide - NP_033999
swissprot - F8WHU6
Ensembl - ENSMUSG00000025370
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdh10aENSDARG00000055843Danio rerio
 cdh6ENSDARG00000014522Danio rerio
 LO017650.1ENSDARG00000103903Danio rerio
 CDH9ENSGALG00000012923Gallus gallus
 CDH9ENSG00000113100Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cdh6 / P97326 / Cadherin-6 / P55285*ENSMUSG0000003938572
Cdh10 / P70408 / Cadherin-10 / Q9Y6N8*ENSMUSG0000002232170
Cdh7 / Q8BM92 / Cadherin-7 / Q9ULB5*ENSMUSG0000002631258
Cdh12 / Q5RJH3 / Cadherin-12 / P55289*ENSMUSG0000004045258
Cdh18 / cadherin 18 / Q13634*ENSMUSG0000004042057
Cdh11 / P55288 / Cadherin-11 / P55287*ENSMUSG0000003167356
Cdh8 / P97291 / Cadherin-8 / P55286*ENSMUSG0000003651055
Cdh20 / Q9Z0M3 / Cadherin-20 / Q9HBT6*ENSMUSG0000005084054
Cdh22 / Q9WTP5 / Cadherin-22 / Q9UJ99*ENSMUSG0000005316650
Cdh24 / Q6PFX6 / Cadherin-24 / Q86UP0*ENSMUSG0000005967448
Cdh19 / cadherin 19, type 2 / Q9H159* / cadherin 19*ENSMUSG0000004721644


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007416 synapse assembly IMP
 biological_processGO:0099560 synaptic membrane adhesion IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0099055 integral component of postsynaptic membrane IDA
 cellular_componentGO:0099056 integral component of presynaptic membrane IDA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0006073 abnormal retinal bipolar cell morphology "anomalous structure of the cells that transmit signals from the photoreceptors to retinal amacrine and ganglion cells" [smb:Susan M Bello, Mouse Genome Informatics Curator, J:92623:]
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Allelic Composition: Saa3tm1(KOMP)Vlcg/Saa3+
Genetic Background: involves: C57BL/6NTac

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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