ENSMUSG00000050840


Mus musculus

Features
Gene ID: ENSMUSG00000050840
  
Biological name :Cdh20
  
Synonyms : Cadherin-20 / Cdh20 / Q9Z0M3
  
Possible biological names infered from orthology : Q9HBT6
  
Species: Mus musculus
  
Chr. number: 1
Strand: 1
Band: E2.1
Gene start: 104768529
Gene end: 104995481
  
Corresponding Affymetrix probe sets: 10348999 (MoGene1.0st)   1450312_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000052078
NCBI entrez gene - 23836     See in Manteia.
MGI - MGI:1346069
RefSeq - NM_011800
RefSeq Peptide - NP_035930
swissprot - Q9Z0M3
Ensembl - ENSMUSG00000050840
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDH20ENSGALG00000012906Gallus gallus
 CDH20ENSG00000101542Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cdh7 / Q8BM92 / Cadherin-7 / Q9ULB5*ENSMUSG0000002631261
Cdh6 / P97326 / Cadherin-6 / P55285*ENSMUSG0000003938557
Cdh10 / P70408 / Cadherin-10 / Q9Y6N8*ENSMUSG0000002232156
Cdh8 / P97291 / Cadherin-8 / P55286*ENSMUSG0000003651056
Cdh11 / P55288 / Cadherin-11 / P55287*ENSMUSG0000003167355
Cdh18 / cadherin 18 / Q13634*ENSMUSG0000004042055
Cdh12 / Q5RJH3 / Cadherin-12 / P55289*ENSMUSG0000004045255
Cdh9 / cadherin 9 / Q9ULB4*ENSMUSG0000002537053
Cdh22 / Q9WTP5 / Cadherin-22 / Q9UJ99*ENSMUSG0000005316652
Cdh24 / Q6PFX6 / Cadherin-24 / Q86UP0*ENSMUSG0000005967449
Cdh19 / cadherin 19, type 2 / Q9H159* / cadherin 19*ENSMUSG0000004721644


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr