ENSG00000101542


Homo sapiens

Features
Gene ID: ENSG00000101542
  
Biological name :CDH20
  
Synonyms : cadherin 20 / CDH20 / Q9HBT6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 18
Strand: 1
Band: q21.33
Gene start: 61333582
Gene end: 61555773
  
Corresponding Affymetrix probe sets: 210913_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000442226
Ensembl peptide - ENSP00000444767
Ensembl peptide - ENSP00000262717
NCBI entrez gene - 28316     See in Manteia.
OMIM - 605807
RefSeq - NM_031891
RefSeq Peptide - NP_114097
swissprot - Q9HBT6
Ensembl - ENSG00000101542
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CDH20ENSGALG00000012906Gallus gallus
 Cdh20ENSMUSG00000050840Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDH7 / Q9ULB5 / cadherin 7ENSG0000008113861
CDH6 / P55285 / cadherin 6ENSG0000011336158
CDH18 / Q13634 / cadherin 18ENSG0000014552656
CDH11 / P55287 / cadherin 11ENSG0000014093756
CDH8 / P55286 / cadherin 8ENSG0000015039456
CDH10 / Q9Y6N8 / cadherin 10ENSG0000004073156
CDH12 / P55289 / cadherin 12ENSG0000015416255
CDH9 / Q9ULB4 / cadherin 9ENSG0000011310054
CDH22 / Q9UJ99 / cadherin 22ENSG0000014965452
CDH24 / Q86UP0 / cadherin 24ENSG0000013988050
CDH19 / Q9H159 / cadherin 19ENSG0000007199147


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr