ENSG00000140937


Homo sapiens

Features
Gene ID: ENSG00000140937
  
Biological name :CDH11
  
Synonyms : cadherin 11 / CDH11 / P55287
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q21
Gene start: 64943753
Gene end: 65126112
  
Corresponding Affymetrix probe sets: 207172_s_at (Human Genome U133 Plus 2.0 Array)   207173_x_at (Human Genome U133 Plus 2.0 Array)   236179_at (Human Genome U133 Plus 2.0 Array)   239286_at (Human Genome U133 Plus 2.0 Array)   239769_at (Human Genome U133 Plus 2.0 Array)   241780_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457812
Ensembl peptide - ENSP00000456772
Ensembl peptide - ENSP00000484650
Ensembl peptide - ENSP00000268603
Ensembl peptide - ENSP00000377711
Ensembl peptide - ENSP00000455120
Ensembl peptide - ENSP00000455420
Ensembl peptide - ENSP00000455697
Ensembl peptide - ENSP00000455779
Ensembl peptide - ENSP00000456110
NCBI entrez gene - 1009     See in Manteia.
OMIM - 600023
RefSeq - XM_017022830
RefSeq - NM_001308392
RefSeq - NM_001797
RefSeq - XM_005255761
RefSeq - XM_005255762
RefSeq - XM_005255763
RefSeq - XM_011522803
RefSeq Peptide - NP_001295321
RefSeq Peptide - NP_001317505
RefSeq Peptide - NP_001788
swissprot - H3BP26
swissprot - H3BPQ2
swissprot - H3BQB5
swissprot - H3BQH2
swissprot - H3BR78
swissprot - H3BUU9
swissprot - H3BSM4
swissprot - P55287
swissprot - A0A087X227
Ensembl - ENSG00000140937
  
Related genetic diseases (OMIM): 211380 - Elsahy-Waters syndrome, 211380
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdh11ENSDARG00000021442Danio rerio
 CDH11ENSGALG00000039985Gallus gallus
 Cdh11ENSMUSG00000031673Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDH8 / P55286 / cadherin 8ENSG0000015039465
CDH18 / Q13634 / cadherin 18ENSG0000014552658
CDH6 / P55285 / cadherin 6ENSG0000011336157
CDH10 / Q9Y6N8 / cadherin 10ENSG0000004073157
CDH7 / Q9ULB5 / cadherin 7ENSG0000008113857
CDH12 / P55289 / cadherin 12ENSG0000015416256
CDH20 / Q9HBT6 / cadherin 20ENSG0000010154256
CDH24 / Q86UP0 / cadherin 24ENSG0000013988055
CDH9 / Q9ULB4 / cadherin 9ENSG0000011310055
CDH22 / Q9UJ99 / cadherin 22ENSG0000014965450
CDH19 / Q9H159 / cadherin 19ENSG0000007199145


Protein motifs (from Interpro)
Interpro ID Name
 IPR000233  Cadherin, cytoplasmic domain
 IPR002126  Cadherin
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR027397  Catenin binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0001503 ossification NAS
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0021957 corticospinal tract morphogenesis IEA
 biological_processGO:0034332 adherens junction organization TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Adherens junctions interactions


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000042 Absent external genitalia 
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 HP:0000054 Micropenis 
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 HP:0000071 Ureteral stenosis 
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 HP:0000176 Submucous cleft palate "A cleft palate that is covered by the mucous membrane of the roof of the mouth, which can make the cleft more difficult to observe upon physical examination. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue. Hard-palate submucous clefts are characterized by bony defects in the midline of the bony palate. It may be possible to detect a submucous cleft palate upon palpation as a notch in the bony palate." [HPO:curators, pmid:19779505]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000307 Pointed chin 
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000327 Hypoplasia of the maxilla "Underdevelopment of the `Maxilla` (FMA:9711)." [HPO:probinson]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000410 Mixed hearing loss 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000455 Broad nasal tip 
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 HP:0000470 Short neck 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000607 Periorbital wrinkles 
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 HP:0000625 Eyelid, cleft "A short discontinuity of the margin of the lower or upper eyelid." [pmid:19125427]
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000670 Carious teeth 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000808 Penoscrotal hypospadias "A severe form of hypospadias in which the urethral opening is located at the junction of the penis and scrotum." [HPO:curators]
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 HP:0000925 Abnormality of the vertebral column "Any abnormality of the spine (vertebral column)." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001537 Umbilical hernia "Protrusion of abdominal contents through a defect in the abdominal wall musculature around the umbilicus. Skin and subcutaneous tissue overlie the defect." [HPO:curators]
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 HP:0001545 Anteriorly placed anus "Anterior malposition of the anus." [HPO:curators]
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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 HP:0002553 Arched eyebrows 
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 HP:0002561 Absent nipples 
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 HP:0002679 Abnormality of the sella turcica "Abnormality of the sella turcica, a saddle-shaped depression in the sphenoid bone at the base of the human skull." [HPO:curators]
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 HP:0002684 Thickened calvaria "The presence of an abnormally thick calvaria." [HPO:curators]
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002836 Bladder exstrophy 
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 HP:0003423 Thoracolumbar kyphoscoliosis 
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0006480 Premature loss of teeth 
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 HP:0008516 Abnormality of the vertebral spinous processes 
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 HP:0009748 Fleshy earlobes "Abnormally thickened or fleshy earlobes." [HPO:curators]
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 HP:0009814 Peromelia involving the upper limbs "`Peromelia` (HP:0009828) affecting only the upper limbs." [HPO:sdoelken]
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 HP:0009818 Amelia involving the lower limbs "`Amelia` (HP:0009827) of one or both legs." [HPO:curators]
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 HP:0009907 Adherent earlobe "Attached ear lobes." [HPO:curators]
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 HP:0010299 Abnormality of dentin "Any abnormality of dentin, which is a calcified tissue of teeth that is covered by enamel on the crown and cementum on the root and surrounds the entire pulp." [HPO:curators]
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 HP:0010724 Advanced pneumatization of the mastoid process "An abnormally advanced degree of pneumatization (i.e., formation of air cells) in the `mastoid process` (FMA:52872) with respect to age-dependent norms." [HPO:probinson]
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 HP:0010749 Blepharochalasis "Blepharochalasis is characterized by recurrent, non-painful, nonerythematous episodes of eyelid edema. It has been divided into hypertrophic and atrophic forms. In the hypertrophic form recurrent edema results in orbital fat herniation through a weakened orbital septum. Most patients who have blepharochalasis present in an atrophic condition with atrophy of redundant eyelid skin and superior nasal fat pads." [PMID:3207663]
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 HP:0011072 Rootless teeth 
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 HP:0012368 Flat face "Absence of concavity or convexity of the face when viewed in profile." [pmid:19125436]
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 HP:0100334 Unilateral cleft palate 
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 HP:0430026 Abnormality of the shape of the midface "An abnormal morphology (form) of the midface or its components, the cheeks, maxilla, zygomatic bone, malar region, and infraorbital rims." [orcid.org/0000-0001-5889-4463]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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