ENSDARG00000024026


Danio rerio

Features
Gene ID: ENSDARG00000024026
  
Biological name :sdf2
  
Synonyms : sdf2 / stromal cell-derived factor 2
  
Possible biological names infered from orthology : Q99470
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 26021496
Gene end: 26028205
  
Corresponding Affymetrix probe sets: Dr.15105.1.S1_at (Zebrafish Array)   Dr.24817.1.S1_at (Zebrafish Array)   Dr.25425.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000029000
NCBI entrez gene - 336879     See in Manteia.
RefSeq - NM_200039
RefSeq Peptide - NP_956333
swissprot - F1R0Q8
ZFIN ID - ZDB-GENE-030131-8823
Ensembl - ENSDARG00000024026
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SDF2ENSGALG00000037709Gallus gallus
 SDF2ENSG00000132581Homo sapiens
 Sdf2ENSMUSG00000002064Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sdf2l1 / stromal cell-derived factor 2-like 1 / Q9ESP1* / Q9HCN8* / Stromal cell-derived factor 2-like protein 1 *ENSDARG0000003563155


Protein motifs (from Interpro)
Interpro ID Name
 IPR016093  MIR motif
 IPR027005  Glycosyltransferase 39-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035269 protein O-linked mannosylation IEA
 biological_processGO:0071712 ER-associated misfolded protein catabolic process IBA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IBA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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