ENSDARG00000024479


Danio rerio

Features
Gene ID: ENSDARG00000024479
  
Biological name :pigk
  
Synonyms : phosphatidylinositol glycan anchor biosynthesis, class K / pigk
  
Possible biological names infered from orthology : Q92643 / Q9CXY9
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 9061885
Gene end: 9138497
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000039104
NCBI entrez gene - 415239     See in Manteia.
RefSeq - NM_001002149
RefSeq Peptide - NP_001002149
swissprot - Q6IQM5
ZFIN ID - ZDB-GENE-040625-162
Ensembl - ENSDARG00000024479
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PIGKENSGALG00000009015Gallus gallus
 PIGKENSG00000142892Homo sapiens
 PigkENSMUSG00000039047Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lgmn / legumain / O89017* / Q99538*ENSDARG0000003915021
BX005305.4ENSDARG0000011438519
BX005305.3 / Danio rerio legumain (LOC100005356), mRNA.ENSDARG0000011419419
BX005305.1ENSDARG0000010927119
BX005305.5ENSDARG0000011618719
BX005305.2ENSDARG0000011137319
CU855711.1ENSDARG0000008864319


Protein motifs (from Interpro)
Interpro ID Name
 IPR001096  Peptidase C13, legumain
 IPR028361  GPI-anchor transamidase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0016255 attachment of GPI anchor to protein IEA
 biological_processGO:0034394 protein localization to cell surface IMP
 biological_processGO:0050976 detection of mechanical stimulus involved in sensory perception of touch IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042765 GPI-anchor transamidase complex IBA
 molecular_functionGO:0003923 GPI-anchor transamidase activity IEA
 molecular_functionGO:0008233 peptidase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0000445 optic tectum optic tectum composition , abnormal
Show

 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
whole organism viability , abnormal
whole organism movement quality , abnormal
whole organism movement behavioral quality , abnormal
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 ZFA:0009090 pigment cell pigment cell quality , abnormal
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 ZFA:0009091 melanocyte melanocyte area , abnormal
melanocyte increased size , abnormal
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 ZFA:0009150 Rohon-Beard neuron Rohon-Beard neuron voltage-gated sodium channel complex mislocalised , abnormal
Rohon-Beard neuron decreased functionality , abnormal
Rohon-Beard neuron voltage-gated sodium channel activity decreased process quality , abnormal
Show

 ZFA:0009310 retinal ganglion cell retinal ganglion cell axon misrouted , abnormal
retinal ganglion cell axon defasciculated , abnormal
retinal ganglion cell axon organization quality , abnormal
retinal ganglion cell axon displaced , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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