ENSDARG00000039150


Danio rerio

Features
Gene ID: ENSDARG00000039150
  
Biological name :lgmn
  
Synonyms : legumain / lgmn
  
Possible biological names infered from orthology : O89017 / Q99538
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 36037970
Gene end: 36050327
  
Corresponding Affymetrix probe sets: Dr.24341.1.S1_at (Zebrafish Array)   NM_214759_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000114480
Ensembl peptide - ENSDARP00000149508
Ensembl peptide - ENSDARP00000119347
NCBI entrez gene - 406625     See in Manteia.
RefSeq - NM_214759
RefSeq Peptide - NP_999924
swissprot - B8JHW1
swissprot - B8JHW0
ZFIN ID - ZDB-GENE-021030-1
Ensembl - ENSDARG00000039150
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LGMNENSGALG00000010811Gallus gallus
 LGMNENSG00000100600Homo sapiens
 LgmnENSMUSG00000021190Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
BX005305.2ENSDARG0000011137323
BX005305.3 / Danio rerio legumain (LOC100005356), mRNA.ENSDARG0000011419423
CU855711.1ENSDARG0000008864323
BX005305.5ENSDARG0000011618723
BX005305.1ENSDARG0000010927123
BX005305.4ENSDARG0000011438523
pigk / phosphatidylinositol glycan anchor biosynthesis, class K / Q92643* / Q9CXY9*ENSDARG0000002447919


Protein motifs (from Interpro)
Interpro ID Name
 IPR001096  Peptidase C13, legumain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006624 vacuolar protein processing IBA
 biological_processGO:0031103 axon regeneration IMP
 biological_processGO:0042246 tissue regeneration IMP
 biological_processGO:0051603 proteolysis involved in cellular protein catabolic process IBA
 cellular_componentGO:0005773 vacuole IEA
 molecular_functionGO:0004197 cysteine-type endopeptidase activity IBA
 molecular_functionGO:0008233 peptidase activity IEA


Pathways (from Reactome)
Pathway description
Trafficking and processing of endosomal TLR
Vitamin D (calciferol) metabolism
MHC class II antigen presentation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000219 intermediate reticular formation intermediate reticular formation axon regeneration disrupted , abnormal
Show

 ZFA:0000815 nucleus of the medial longitudinal fasciculus medulla oblongata nucleus of the medial longitudinal fasciculus medulla oblongata axon regeneration disrupted , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr