ENSDARG00000024522


Danio rerio

Features
Gene ID: ENSDARG00000024522
  
Biological name :prf1.6
  
Synonyms : perforin 1.6 / prf1.6
  
Possible biological names infered from orthology : P10820 / P14222 / perforin 1 / perforin 1 (pore forming protein) / PRF1
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 29670527
Gene end: 29677302
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000030227
Ensembl peptide - ENSDARP00000122637
NCBI entrez gene - 795573     See in Manteia.
RefSeq - NM_001089507
RefSeq Peptide - NP_001082976
swissprot - B0R0K5
swissprot - B0R0K4
ZFIN ID - ZDB-GENE-070410-126
Ensembl - ENSDARG00000024522
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000045916Gallus gallus
 PRF1ENSG00000180644Homo sapiens
 Prf1ENSMUSG00000037202Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prf1.5 / perforin 1.5 / PRF1* / P14222* / P10820* / perforin 1* / perforin 1 (pore forming protein)*ENSDARG0000003759875
prf1.9 / perforin 1.9 / PRF1* / P14222* / P10820* / perforin 1* / perforin 1 (pore forming protein)*ENSDARG0000006066235
prf1.1 / perforin 1.1 / PRF1* / P14222* / P10820* / perforin 1* / perforin 1 (pore forming protein)*ENSDARG0000003039435
prf1.3 / perforin 1.3 / PRF1* / P14222* / P10820* / perforin 1* / perforin 1 (pore forming protein)*ENSDARG0000000157235
prf1.2 / perforin 1.2 / PRF1* / P14222* / P10820* / perforin 1* / perforin 1 (pore forming protein)*ENSDARG0000002144434
prf1.8 / prf1.7 / perforin 1.7 / PRF1* / P10820* / P14222* / perforin 1* / perforin 1 (pore forming protein)*ENSDARG0000011078134
prf1.8 / prf1.7 / perforin 1.8 / PRF1* / P10820* / P14222* / perforin 1* / perforin 1 (pore forming protein)*ENSDARG0000010942833


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR020863  Membrane attack complex component/perforin domain, conserved site
 IPR020864  Membrane attack complex component/perforin (MACPF) domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0019835 cytolysis IEA
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr