ENSG00000180644


Homo sapiens

Features
Gene ID: ENSG00000180644
  
Biological name :PRF1
  
Synonyms : P14222 / perforin 1 / PRF1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q22.1
Gene start: 70597348
Gene end: 70602775
  
Corresponding Affymetrix probe sets: 1553681_a_at (Human Genome U133 Plus 2.0 Array)   214617_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000398568
Ensembl peptide - ENSP00000492048
Ensembl peptide - ENSP00000362305
NCBI entrez gene - 5551     See in Manteia.
OMIM - 170280
RefSeq - NM_001083116
RefSeq - NM_005041
RefSeq Peptide - NP_001076585
RefSeq Peptide - NP_005032
swissprot - A0A1W2PR25
swissprot - P14222
Ensembl - ENSG00000180644
  
Related genetic diseases (OMIM): 603553 - Hemophagocytic lymphohistiocytosis, familial, 2, 603553
  605027 - Lymphoma, non-Hodgkin, 605027
  609135 - Aplastic anemia, 609135
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prf1.1ENSDARG00000030394Danio rerio
 prf1.2ENSDARG00000021444Danio rerio
 prf1.3ENSDARG00000001572Danio rerio
 prf1.5ENSDARG00000037598Danio rerio
 prf1.6ENSDARG00000024522Danio rerio
 prf1.7ENSDARG00000110781Danio rerio
 prf1.7ENSDARG00000109428Danio rerio
 prf1.9ENSDARG00000060662Danio rerio
 ENSGALG00000045916Gallus gallus
 Prf1ENSMUSG00000037202Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000008  C2 domain
 IPR020863  Membrane attack complex component/perforin domain, conserved site
 IPR020864  Membrane attack complex component/perforin (MACPF) domain
 IPR035892  C2 domain superfamily
 IPR037300  Perforin-1, C2 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001771 immunological synapse formation IDA
 biological_processGO:0002357 defense response to tumor cell IEA
 biological_processGO:0002418 immune response to tumor cell IEA
 biological_processGO:0006915 apoptotic process TAS
 biological_processGO:0006968 cellular defense response TAS
 biological_processGO:0019835 cytolysis ISS
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0051607 defense response to virus IEA
 biological_processGO:0051712 positive regulation of killing of cells of other organism IDA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031904 endosome lumen IEA
 cellular_componentGO:0044194 cytolytic granule IEA
 molecular_functionGO:0005509 calcium ion binding ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0022829 wide pore channel activity IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001259 Coma 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001287 Meningitis 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001882 Leukopenia 
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 HP:0001903 Anemia 
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 HP:0001915 Aplastic anemia 
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 HP:0002155 Hypertriglyceridemia 
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002301 Hemiplegia "Paralysis (complete loss of muscle function) in the arm, leg, and in some cases the face on one side of the body." [HPO:curators]
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 HP:0002383 Encephalitis 
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 HP:0002445 Tetraplegia 
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 HP:0002516 Increased intracranial pressure 
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 HP:0002665 Lymphoma "A cancer originating in lymphocytes and presenting as a solid tumor of lymhpoid cells." [HPO:curators]
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 HP:0002716 Lymphadenopathy 
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 HP:0002902 Hyponatremia 
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 HP:0002922 Increased CSF protein 
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 HP:0003073 Hypoalbuminemia "Reduction in the concentration of albumin in the blood." [HPO:curators]
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 HP:0003075 Hypoproteinemia 
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 HP:0003281 Increased serum ferritin 
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 HP:0003573 Increased total bilirubin 
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 HP:0005528 Bone marrow hypoplasia 
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 HP:0007430 Generalized edema "Generalized abnormal accumulation of fluid beneath the skin, or in one or more cavities of the body." [HPO:curators]
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 HP:0008151 Prolonged prothrombin and partial thromboplastin times 
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 HP:0011900 Hypofibrinogenemia "Decreased concentration of fibrinogen in the blood." [HPO:probinson]
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 HP:0012156 Hemophagocytosis "Phagocytosis by macrophages of erythrocytes, leukocytes, platelets, and their precursors in bone marrow and other tissues." [HPO:probinson]
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 HP:0012229 CSF pleocytosis "An increased white blood cell count in the cerebrospinal fluid." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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