ENSDARG00000025386


Danio rerio

Features
Gene ID: ENSDARG00000025386
  
Biological name :lsm14b
  
Synonyms : lsm14b / LSM family member 14B
  
Possible biological names infered from orthology : B / Q8CGC4 / Q9BX40
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 553396
Gene end: 567183
  
Corresponding Affymetrix probe sets: Dr.9174.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000033806
NCBI entrez gene - 393140     See in Manteia.
RefSeq - NM_200171
RefSeq Peptide - NP_956465
swissprot - F1Q898
ZFIN ID - ZDB-GENE-040426-779
Ensembl - ENSDARG00000025386
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM14BENSGALG00000005125Gallus gallus
 LSM14BENSG00000149657Homo sapiens
 B ENSMUSG00000039108Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lsm14ab / LSM14A mRNA processing body assembly factor b / A * / Q8ND56* / LSM14A* / Q8K2F8* / LSM14A, mRNA processing body assembly factor*ENSDARG0000010055346
lsm14aa / LSM14A mRNA processing body assembly factor a / A * / Q8ND56* / LSM14A* / Q8K2F8* / LSM14A, mRNA processing body assembly factor*ENSDARG0000000660046


Protein motifs (from Interpro)
Interpro ID Name
 IPR010920  LSM domain superfamily
 IPR019050  FDF domain
 IPR025609  Lsm14-like, N-terminal
 IPR025761  FFD box
 IPR025762  DFDF domain
 IPR025768  TFG box


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005737 cytoplasm IDA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr