ENSDARG00000100553


Danio rerio

Features
Gene ID: ENSDARG00000100553
  
Biological name :lsm14ab
  
Synonyms : lsm14ab / LSM14A mRNA processing body assembly factor b
  
Possible biological names infered from orthology : A / LSM14A / LSM14A, mRNA processing body assembly factor / Q8K2F8 / Q8ND56
  
Species: Danio rerio
  
Chr. number: 18
Strand: 1
Band:
Gene start: 302796
Gene end: 325636
  
Corresponding Affymetrix probe sets: Dr.5675.1.S1_at (Zebrafish Array)   NM_214772_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000139299
Ensembl peptide - ENSDARP00000140356
NCBI entrez gene - 406800     See in Manteia.
RefSeq - XM_005158973
RefSeq - XM_005158974
RefSeq - NM_214772
RefSeq Peptide - NP_999937
swissprot - Q6P0B2
swissprot - A0A0R4IVM1
ZFIN ID - ZDB-GENE-040426-2462
Ensembl - ENSDARG00000100553
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM14AENSGALG00000004935Gallus gallus
 LSM14AENSG00000257103Homo sapiens
 A ENSMUSG00000066568Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lsm14aa / LSM14A mRNA processing body assembly factor a / A * / Q8ND56* / LSM14A* / Q8K2F8* / LSM14A, mRNA processing body assembly factor*ENSDARG0000000660065
lsm14b / LSM family member 14B / B * / Q8CGC4* / Q9BX40*ENSDARG0000002538639


Protein motifs (from Interpro)
Interpro ID Name
 IPR010920  LSM domain superfamily
 IPR019050  FDF domain
 IPR025609  Lsm14-like, N-terminal
 IPR025761  FFD box
 IPR025762  DFDF domain
 IPR025768  TFG box


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr