ENSGALG00000004935


Gallus gallus

Features
Gene ID: ENSGALG00000004935
  
Biological name :LSM14A
  
Synonyms : LSM14A / LSM14A, mRNA processing body assembly factor
  
Possible biological names infered from orthology : A / Q8K2F8 / Q8ND56
  
Species: Gallus gallus
  
Chr. number: 11
Strand: 1
Band:
Gene start: 11011331
Gene end: 11028944
  
Corresponding Affymetrix probe sets: Gga.9196.1.S1_at (Chicken Array)   GgaAffx.12010.1.S1_s_at (Chicken Array)   GgaAffx.20596.1.S1_at (Chicken Array)   GgaAffx.3077.1.S1_at (Chicken Array)   GgaAffx.3077.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000007884
NCBI entrez gene - 415781     See in Manteia.
RefSeq - XM_015292443
RefSeq - NM_001012778
RefSeq - XM_015292441
RefSeq - XM_015292442
RefSeq Peptide - NP_001012796
swissprot - Q5ZL27
Ensembl - ENSGALG00000004935
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lsm14aaENSDARG00000006600Danio rerio
 lsm14abENSDARG00000100553Danio rerio
 LSM14AENSG00000257103Homo sapiens
 A ENSMUSG00000066568Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
LSM14B / LSM family member 14B / B * / Q8CGC4* / Q9BX40*ENSGALG0000000512550


Protein motifs (from Interpro)
Interpro ID Name
 IPR010920  LSM domain superfamily
 IPR019050  FDF domain
 IPR025609  Lsm14-like, N-terminal
 IPR025761  FFD box
 IPR025762  DFDF domain
 IPR025768  TFG box


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0039529 RIG-I signaling pathway IEA
 biological_processGO:0051607 defense response to virus IEA
 biological_processGO:0060340 positive regulation of type I interferon-mediated signaling pathway IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 molecular_functionGO:0003690 double-stranded DNA binding IEA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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