ENSDARG00000006600


Danio rerio

Features
Gene ID: ENSDARG00000006600
  
Biological name :lsm14aa
  
Synonyms : lsm14aa / LSM14A mRNA processing body assembly factor a
  
Possible biological names infered from orthology : A / LSM14A / LSM14A, mRNA processing body assembly factor / Q8K2F8 / Q8ND56
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 35889102
Gene end: 35909626
  
Corresponding Affymetrix probe sets: Dr.13312.1.A1_at (Zebrafish Array)   Dr.15844.1.S1_at (Zebrafish Array)   Dr.15844.2.A1_at (Zebrafish Array)   NM_200425_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000114341
Ensembl peptide - ENSDARP00000104913
Ensembl peptide - ENSDARP00000118954
Ensembl peptide - ENSDARP00000009428
NCBI entrez gene - 393397     See in Manteia.
RefSeq - NM_200425
RefSeq Peptide - NP_956719
swissprot - F1QIS2
swissprot - F1Q8I5
swissprot - Q6P111
swissprot - Q7SXR4
ZFIN ID - ZDB-GENE-040426-1567
Ensembl - ENSDARG00000006600
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LSM14AENSGALG00000004935Gallus gallus
 LSM14AENSG00000257103Homo sapiens
 A ENSMUSG00000066568Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lsm14ab / LSM14A mRNA processing body assembly factor b / A * / Q8ND56* / LSM14A* / Q8K2F8* / LSM14A, mRNA processing body assembly factor*ENSDARG0000010055366
lsm14b / LSM family member 14B / B * / Q8CGC4* / Q9BX40*ENSDARG0000002538639


Protein motifs (from Interpro)
Interpro ID Name
 IPR010920  LSM domain superfamily
 IPR019050  FDF domain
 IPR025609  Lsm14-like, N-terminal
 IPR025761  FFD box
 IPR025762  DFDF domain
 IPR025768  TFG box


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr