ENSDARG00000026701


Danio rerio

Features
Gene ID: ENSDARG00000026701
  
Biological name :gtf2h1
  
Synonyms : general transcription factor IIH, polypeptide 1 / gtf2h1
  
Possible biological names infered from orthology : general transcription factor IIH subunit 1 / P32780
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 3196855
Gene end: 3217115
  
Corresponding Affymetrix probe sets: Dr.16674.1.S1_at (Zebrafish Array)   NM_001004596_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000038901
NCBI entrez gene - 447857     See in Manteia.
RefSeq - NM_001004596
RefSeq Peptide - NP_001004596
swissprot - Q66I03
ZFIN ID - ZDB-GENE-040912-164
Ensembl - ENSDARG00000026701
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GTF2H1ENSGALG00000042340Gallus gallus
 GTF2H1ENSG00000110768Homo sapiens
 Gtf2h1ENSMUSG00000006599Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005607  BSD domain
 IPR011993  PH-like domain superfamily
 IPR013876  TFIIH p62 subunit, N-terminal
 IPR027079  TFIIH subunit Tfb1/GTF2H1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IBA
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IBA
 biological_processGO:0006366 transcription by RNA polymerase II IBA
 biological_processGO:0070816 phosphorylation of RNA polymerase II C-terminal domain IBA
 cellular_componentGO:0000439 core TFIIH complex IBA
 cellular_componentGO:0005675 holo TFIIH complex IBA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IBA
 molecular_functionGO:0008353 RNA polymerase II carboxy-terminal domain kinase activity IBA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Formation of Incision Complex in GG-NER
Dual Incision in GG-NER
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
mRNA Capping
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase II Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase I Transcription Termination
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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