ENSDARG00000027088


Danio rerio

Features
Gene ID: ENSDARG00000027088
  
Biological name :ptgdsb.1
  
Synonyms : prostaglandin D2 synthase b, tandem duplicate 1 / ptgdsb.1
  
Possible biological names infered from orthology : AL807752.7 / O09114 / P41222 / prostaglandin D2 synthase / Prostaglandin-H2 D-isomerase / PTGDS
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 17027310
Gene end: 17029374
  
Corresponding Affymetrix probe sets: Dr.1192.1.S1_at (Zebrafish Array)   Dr.1192.1.S1_a_at (Zebrafish Array)   NM_213634_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000037484
NCBI entrez gene - 336492     See in Manteia.
RefSeq - NM_213634
RefSeq Peptide - NP_998799
swissprot - Q8QGV5
ZFIN ID - ZDB-GENE-030131-8436
Ensembl - ENSDARG00000027088
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTGDSENSGALG00000030886Gallus gallus
 AL807752.7ENSG00000284341Homo sapiens
 PTGDSENSG00000107317Homo sapiens
 PtgdsENSMUSG00000015090Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptgdsb.2 / prostaglandin D2 synthase b, tandem duplicate 2 / PTGDS* / O09114* / P41222* / AL807752.7* / prostaglandin D2 synthase* / Prostaglandin-H2 D-isomerase *ENSDARG0000007162682
zgc:153704 / PTGDS* / P41222* / AL807752.7* / prostaglandin D2 synthase*ENSDARG0000004597954
ptgdsa / prostaglandin D2 synthase a / PTGDS* / O09114* / P41222* / AL807752.7* / prostaglandin D2 synthase* / Prostaglandin-H2 D-isomerase *ENSDARG0000006943928
lcn15 / lipocalin 15 / PTGDS* / O09114* / P41222* / AL807752.7* / prostaglandin D2 synthase* / Prostaglandin-H2 D-isomerase *ENSDARG0000006785126


Protein motifs (from Interpro)
Interpro ID Name
 IPR000566  Lipocalin/cytosolic fatty-acid binding domain
 IPR002345  Lipocalin
 IPR002972  Prostaglandin D synthase
 IPR012674  Calycin
 IPR022272  Lipocalin family conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0001972 retinoic acid binding IDA
 molecular_functionGO:0036094 small molecule binding IEA


Pathways (from Reactome)
Pathway description
Synthesis of Prostaglandins (PG) and Thromboxanes (TX)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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