ENSDARG00000027403


Danio rerio

Features
Gene ID: ENSDARG00000027403
  
Biological name :zgpat
  
Synonyms : Q7SXW2 / zgpat / zinc finger, CCCH-type with G patch domain
  
Possible biological names infered from orthology : Q8N5A5 / Q8VDM1 / zinc finger CCCH-type and G-patch domain containing
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 12860260
Gene end: 12875188
  
Corresponding Affymetrix probe sets: Dr.8874.1.A1_at (Zebrafish Array)   Dr.8874.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000030077
Ensembl peptide - ENSDARP00000153327
NCBI entrez gene - 393457     See in Manteia.
swissprot - Q7SXW2
ZFIN ID - ZDB-GENE-040426-1248
Ensembl - ENSDARG00000027403
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZGPATENSGALG00000006092Gallus gallus
 ZGPATENSG00000197114Homo sapiens
 ZgpatENSMUSG00000027582Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000467  G-patch domain
 IPR000571  Zinc finger, CCCH-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007175 negative regulation of epidermal growth factor-activated receptor activity ISS
 biological_processGO:0045892 negative regulation of transcription, DNA-templated ISS
 cellular_componentGO:0005634 nucleus ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity ISS
 molecular_functionGO:0043565 sequence-specific DNA binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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