ENSDARG00000029058


Danio rerio

Features
Gene ID: ENSDARG00000029058
  
Biological name :rbbp4
  
Synonyms : rbbp4 / retinoblastoma binding protein 4
  
Possible biological names infered from orthology : Histone-binding protein RBBP4 / Q09028 / Q60972 / RB binding protein 4, chromatin remodeling factor
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 30999833
Gene end: 31007417
  
Corresponding Affymetrix probe sets: Dr.2741.1.S1_at (Zebrafish Array)   NM_212595_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000048143
NCBI entrez gene - 321726     See in Manteia.
RefSeq - NM_212595
RefSeq Peptide - NP_997760
swissprot - Q1LXD4
ZFIN ID - ZDB-GENE-030131-445
Ensembl - ENSDARG00000029058
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBBP4ENSGALG00000003522Gallus gallus
 RBBP4ENSG00000162521Homo sapiens
 Rbbp4ENSMUSG00000057236Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbb4l / retinoblastoma binding protein 4, like / RBBP7* / Q16576* / Q60973* / RB binding protein 7, chromatin remodeling factor* / retinoblastoma binding protein 7, chromatin remodeling factor*ENSDARG0000001520894


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR022052  Histone-binding protein RBBP4, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA


Pathways (from Reactome)
Pathway description
G0 and Early G1
PRC2 methylates histones and DNA
Oxidative Stress Induced Senescence
Regulation of TP53 Activity through Acetylation
RNA Polymerase I Transcription Initiation
Regulation of PTEN gene transcription
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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